Unbeaten Russian Khabib eased to a fourth round submission win in UFC 229 at T-Mobile Arena on Saturday night.
But afterwards he jumped out the octagon and attacked McGregor's jujitsu coach Dillon Danis, which has upset his father and coach Abdulmanap.
He told Ren TV: "I will be very hard on this. I warned him. For me, discipline comes first.
"You do whatever you want in the octagon but outside this is the boarder of civilians where there are children, women and strangers.
"Over the octagon should be a peaceful existence."
McGregor, 30, was standing in the octagon recovering from his defeat when he was struck by a member of Khabib's team.
UFC chief Dana White looked furious with Khabib as the sold-out Las Vegas crowd booed the Russian.
Former MMA star Michael Bisping said after the fight that Khabib could be stripped of his belt, face criminal charges and potentially have his visa revoked for his actions.
The long awaited grudge match had been in the pipeline since McGregor attacked his rival's bus at a UFC media day in New York in April.
And that was enough to lure McGregor back to the Octagon after his venture into boxing to fight Floyd Mayweather last year.
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